Publications
Peer-reviewed publications
(last automatic update: 2025-03-07)
- Cuartero CT, Carnegie A, Cucunuba Z, Cori A, Hollis S, van Gaalen R, Baidjoe A, Spina A, Lees J, Cauchemez S, Santos M, Umaña J, Chen C, Gruson H, Gupte P, Tsui J, Shah A, Millan GG, Quevedo DS, Batra N, Torneri A, Kucharski A (2024). “From the 100 Day Mission to 100 lines of software development: how to improve early outbreak analytics.” The Lancet Digital Health. doi:10.1016/S2589-7500(24)00218-8, https://hal.science/hal-04912417.
- Sonabend R, Gruson H, Wolansky L, Kiragga A, Katz D (2024). “FAIR-USE4OS: Guidelines for creating impactful open-source software.” PLoS Computational Biology, 20(5), e1012045. doi:10.1371/journal.pcbi.1012045, https://hal.science/hal-04711753.
- Grenié M, Gruson H (2023). “fundiversity: a modular R package to compute functional diversity indices.” Ecography, 2023(3), e06585. doi:10.1111/ecog.06585, https://hal.science/hal-04022533.
- Sherratt K, Gruson H, Grah R, Johnson H, Niehus R, Prasse B, Sandmann F, Deuschel J, Wolffram D, Abbott S, Ullrich A, Gibson G, Ray E, Reich N, Sheldon D, Wang Y, Wattanachit N, Wang L, Trnka J, Obozinski G, Sun T, Thanou D, Pottier L, Krymova E, Meinke J, Barbarossa MV, Leithauser N, Mohring J, Schneider J, Wlazlo J, Fuhrmann J, Lange B, Rodiah I, Baccam P, Gurung H, Stage S, Suchoski B, Budzinski J, Walraven R, Villanueva I, Tucek V, Smid M, Zajicek M, Perez Alvarez C, Reina B, Bosse N, Meakin S, Castro L, Fairchild G, Michaud I, Osthus D, Alaimo Di Loro P, Maruotti A, Eclerova V, Kraus A, Kraus D, Pribylova L, Dimitris B, Li ML, Saksham S, Dehning J, Mohr S, Priesemann V, Redlarski G, Bejar B, Ardenghi G, Parolini N, Ziarelli G, Bock W, Heyder S, Hotz T, Singh D, Guzman-Merino M, Aznarte J, Morina D, Alonso S, Alvarez E, Lopez D, Prats C, Burgard JP, Rodloff A, Zimmermann T, Kuhlmann A, Zibert J, Pennoni F, Divino F, Catala M, Lovison G, Giudici P, Tarantino B, Bartolucci F, Jona Lasinio G, Mingione M, Farcomeni A, Srivastava A, Montero-Manso P, Adiga A, Hurt B, Lewis B, Marathe M, Porebski P, Venkatramanan S, Bartczuk R, Dreger F, Gambin A, Gogolewski K, Gruziel-Slomka M, Krupa B, Moszyński A, Niedzielewski K, Nowosielski J, Radwan M, Rakowski F, Semeniuk M, Szczurek E, Zielinski J, Kisielewski J, Pabjan B, Holger K, Kheifetz Y, Scholz M, Przemyslaw B, Bodych M, Filinski M, Idzikowski R, Krueger T, Ozanski T, Bracher J, Funk S (2023). “Predictive performance of multi-model ensemble forecasts of COVID-19 across European nations.” eLife, 12. doi:10.7554/elife.81916, https://hal.science/hal-04224083.
- Meakin S, Abbott S, Bosse N, Munday J, Gruson H, Hellewell J, Sherratt K, Chapman L, Prem K, Klepac P, Jombart T, Knight G, Jafari Y, Flasche S, Waites W, Jit M, Eggo R, Villabona-Arenas CJ, Russell T, Medley G, Edmunds WJ, Davies N, Liu Y, Hué S, Brady O, Pung R, Abbas K, Gimma A, Mee P, Endo A, Clifford S, Sun FY, Mccarthy C, Quilty B, Rosello A, Sandmann F, Barnard R, Kucharski A, Procter S, Jarvis C, Gibbs H, Hodgson D, Lowe R, Atkins K, Koltai M, Pearson C, Finch E, Wong K, Quaife M, O’reilly K, Tully D, Funk S (2022). “Comparative assessment of methods for short-term forecasts of COVID-19 hospital admissions in England at the local level.” BMC Medicine, 20(1), 86. doi:10.1186/s12916-022-02271-x, https://hal.science/hal-03596660.
- Gruson H, Elias M, Parra JL, Andraud C, Berthier S, Doutrelant C, Gomez D (2021). “Distribution of iridescent colours in hummingbird communities results from the interplay between selection for camouflage and communication.” Peer Community Journal, 1, e64. doi:10.24072/pcjournal.7, https://hal.science/hal-02372238.
- Vergne T, Gubbins S, Guinat C, Bauzile B, Delpont M, Chakraborty D, Gruson H, Roche B, Andraud M, Paul M, Guérin J (2021). “Inferring within-flock transmission dynamics of highly pathogenic avian influenza H5N8 virus in France, 2020.” Transboundary and emerging diseases, 68(6), 3151-3155. doi:10.1111/tbed.14202, https://hal.inrae.fr/hal-03479732.
- Gruson H (2020). “Digest: Evolution of camouflage patterns in geckos.” Evolution - International Journal of Organic Evolution, 74(6), 1224-1225. doi:10.1111/evo.13999, This article is a digest of Allen W, Moreno N, Gamble T, Chiari Y. Ecological, behavioral and phylogenetic influences on the evolution of dorsal color pattern in geckos. Evolution. 2020. https://doi.org/10.1111/evo.13915. https://onlinelibrary.wiley.com/doi/10.1111/evo.13915, https://hal.science/hal-02570373.
- Gruson H (2020). “Estimation of colour volumes as concave hypervolumes using \(\alpha\)-shapes.” Methods in Ecology and Evolution, 11(8), 955-963. doi:10.1111/2041-210X.13398, https://hal.science/hal-02558986.
- Gruson H, Andraud C, Daney de Marcillac W, Berthier S, Elias M, Gomez D (2019). “Quantitative characterization of iridescent colours in biological studies: a novel method using optical theory.” Interface Focus, 9(1), 20180049. doi:10.1098/rsfs.2018.0049, https://hal.science/hal-01961448.
- Maia R, Gruson H, Endler J, White T (2019). “PAVO 2: new tools for the spectral and spatial analysis of colour in R.” Methods in Ecology and Evolution, 10(7), 1097-1107. doi:10.1111/2041-210X.13174, https://hal.science/hal-02063659.
- Gruson H (2019). “Digest: Disentangling plumage and behavior contributions to iridescent signals.” Evolution - International Journal of Organic Evolution, 73(3), 623-625. doi:10.1111/evo.13685, This article is a digest of Simpson, R. K., and K. J. McGraw. 2018. Experimental trait mis-matches uncover specificity of evolutionary links between multiple signaling traits and their interactions in hummingbirds. Evolution, doi: 10.1111/evo.13662, https://onlinelibrary.wiley.com/doi/10.1111/evo.13662, https://hal.science/hal-01987390.
- Gruson H, White T, Maia R (2019). “lightr: import spectral data and metadata in R.” Journal of Open Source Software, 4(43), 1857. doi:10.21105/joss.01857, https://hal.science/hal-02342889.
Science communication publications
- Observatoire des oiseaux des jardins : premiers résultats (2014), in L’Oiseau Mag (trimestrial magazine of BirdLife France).