Software

R packages

  • Rarr: A Simple and Performant Native R Reader & Writer for Zarr Arrays
  • mcmcensemble: Ensemble Sampler for Affine-Invariant MCMC
  • numberize: Convert Words to Numbers in Multiple Languages
  • pavo: Perceptual Analysis, Visualization and Organization of Spectral Colour Data
  • pkgicon: A Local and Robust Way to Generate Favicons for Package Documentation Sites
  • remart: Reimplementation of the ‘biomaRt’ Package Using Modern Ensembl APIs
  • romeo: Minimal R ‘OME-Zarr’ Reader
  • scoringutils: Utilities for Scoring and Assessing Predictions
  • semaforos: Get Semáforo Epidemiológico Data from Mexico COVID-19 Response
  • sessioninfo2renv: Convert session info to a Lockfile
  • simpleMH: Simple Metropolis-Hastings MCMC Algorithm
  • ZarrArray: Bring Zarr datasets in R as DelayedArray objects
  • socialmixr: Social Mixing Matrices for Infectious Disease Modelling
  • xlcutter: Parse Batches of ‘xlsx’ Files Based on a Template
  • authoritative: Parse and Deduplicate Author Names
  • contactdata: Social Contact Matrices for 177 Countries
  • epinowcast: A Bayesian Framework for Real-time Infectious Disease Surveillance
  • fundiversity: Easy Computation of Functional Diversity Indices
  • grumpy: Read ‘NumPy’ ‘.npy’ and ‘.npz’ Files
  • lightr: Read Spectrometric Data and Metadata
  • linelist: Tagging and Validating Epidemiological Data

Other software

  • ULM (Unified Life Models) with Stéphane Legendre, François Bienvenu, Guilhem Doulcier, and Maxime Woringer: Software coded in free pascal, with a GTK or Qt graphical interface, enabling the simulation and analysis of deterministic and stochastic discrete time dynamical systems for population dynamics modeling.
  • HTTPS Everywhere as a volunteer maintainer under the leadership of the Electronic Frontier Foundation: HTTPS Everywhere is a browser extension that forces encryption for many major websites, making your browsing more secure.